Phenomenological paired-pulse recovery 2026-10-14
Choose the following original phenomenological mathematical model solely to calculate a paired-pulse readout. It is not experimental data, a fit to the teaching experiment, or a simulation of the Hodgkin-Huxley model. The conditioning action potential defines time zero. Test pulses have fixed width ; denotes their inward electric current amplitude. Impose an absolute neuronal refractory period . No finite test amplitude generates an event for . After that hold, stipulate a required amplitudewith , dimensionless and recovery time constant . Emit a test event exactly when , including equality. For this ideal event readout, assign events to pulse onset and assume the conditioning event is successfully evoked. There is no calculated membrane potential, spike waveform, response latency or stochastic success probability.
The exponential decay represents a combined recovery deficit; it is neither the Hodgkin-Huxley model's nor a measured potassium electrical conductance. One such curve cannot separately identify sodium recovery and persistent potassium electrical conductance. A constant pulse-width amplitude criterion also does not establish an equivalent rule for other pulse widths or voltage trajectories.
At the hold boundary, . At ,at ,Thus a test fails at because of the imposed hold, fails at because recovery is insufficient for that amplitude, and succeeds at . At , a pulse would instead succeed: failure of the weaker pulse was relative refractoriness.
For , solve using the logarithm. The earliest allowed delay isFor this is ; for it is . If , the imposed hold is the only delay restriction. If , no finite delay passes the rule: the required amplitude stays strictly above its asymptotic baseline. A finite experimental “fully recovered” time therefore also needs a tolerance and a readout definition.
Relative neuronal refractory period 2026-10-14
During a relative neuronal refractory period, another action potential is possible, but incomplete recovery changes the excitation needed to obtain it. Remaining sodium ion-channel inactivation and elevated potassium electrical conductance both matter. A hyperpolarization after an action potential can increase the voltage excursion needed for firing, while extra electrical conductance can drain an injected pulse faster. Thus a single fixed neuronal firing threshold measured from the instantaneous voltage misses relevant state variables.[ref]
Recovery can depend on earlier spikes as well as the last one; the Hodgkin-Huxley model and neural adaptation provide richer histories than an imposed reset. A fixed hold in a leaky integrate-and-fire model is a useful simplification with a specified domain, rather than a complete explanation of a relative neuronal refractory period.[ref]
1.4 Limitations of the Leaky Integrate-and-Fire Model. §1.4.3, Adaptation, Refractoriness, and Burst Firing: dependence on preceding activity
Spatial summation 2026-10-14
Spatial summation combines inputs arriving at different synapses. Location matters because a dendrite has axial electrical resistance and leaky membrane capacitance: a local synaptic potential need not arrive at the soma with its original amplitude or time course. A passive dendritic cable makes this attenuation explicit. The superposition principle applies to fixed electric current inputs in a linear passive model, but adding synaptic conductances changes the model's coefficients. Compare voltage changes relative to the same baseline, rather than adding absolute membrane potentials.
A motivating experiment. A 2004 study used – cortical slices from –-day-old rats at –. Somatic whole-cell recordings measured EPSPs in layer-5 pyramidal neurons. Two fine stimulating electrodes were positioned beside imaged dendrites; calcium-sensitive dye localized activation. Each site was stimulated alone, then both together, usually with paired pulses apart. Comparing the combined voltage trace with the sum of individual changes tested the summation rule. Nearby inputs on one branch showed strong amplification at intermediate strengths; inputs on different branches were approximately linear.[ref]
Computational subunits in thin dendrites of pyramidal cells by Alon Polsky and others. pp. 622–623, Figures 1–2; p. 626, Methods
Blocking both excitatory receptor classes eliminated voltage and calcium responses, checking against direct electrical activation. NMDA receptor blockers eliminated or markedly reduced amplification; comparisons with inhibition intact and blocked addressed inhibitory contributions. These controls support local active integration. Passing axons could still recruit unintended synapses; somatic voltage does not measure every local membrane potential. The study tested subthreshold slice responses and pairs of branches, not arbitrary activity in an intact brain.[ref]
Computational subunits in thin dendrites of pyramidal cells by Alon Polsky and others. pp. 622–624: controls; pp. 625–626: limitations
Spike train 2026-10-14
A sequence of action potential times, represented mathematically as a point process or a sum of Dirac deltas. Its event counts, intervals and correlations summarize different aspects of neural activity.
Synapse 2026-10-13
A synapse is a signaling junction between a neuron and another biological cell. The sending side is presynaptic and the receiving side postsynaptic. At a chemical synapse, released neurotransmitter acts on a receptor in the receiving cell membrane. At an electrical synapse, gap junctions provide a direct path for electric current between cells. See 1.1 Elements of Neuronal Systems.
In a common sequence at a chemical synapse, an arriving action potential opens voltage-gated ion channels selective for calcium. Calcium entry triggers fusion of synaptic vesicles with the presynaptic cell membrane, releasing neurotransmitter into the synaptic cleft. Binding to a receptor changes postsynaptic electrical resistance and conductance, directly through an ion channel or through an intracellular signaling pathway. The resulting change in membrane potential is a synaptic potential. See Ion Channels and the Electrical Properties of Membranes.
A useful conductance approximation writes the inward-positive synaptic electric current aswhere describes the activated electrical resistance and conductance, is the postsynaptic membrane potential, and is the reversal potential, the voltage at which this current vanishes. Opening these channels tends to pull toward ; it does not prescribe a current of fixed sign independently of .
For a worked example, let and . A reversal potential of gives , an inward electric current that raises membrane potential. A reversal potential of instead gives , which lowers membrane potential. These are illustrative calculations, not measurements. A reversal potential of can raise from yet oppose reaching a threshold of : a depolarizing input need not be excitatory.
An excitatory synapse favors a subsequent action potential, whereas an inhibitory synapse opposes it. The effect depends on the receptor, the permeating ions, their gradients and the reversal potential; a neurotransmitter does not have one fixed excitatory or inhibitory sign in every context. Even with , an added conductance can reduce responses to other inputs by lowering effective electrical resistance, an effect called shunting inhibition. See Purves and colleagues: excitatory and inhibitory postsynaptic potentials. This dependence matters when translating a biological synapse into a signed weight or an imposed electric current in computational neuroscience.
Synaptic integration 2026-10-13
Synaptic integration is the conversion of inputs at a neuron's synapses into a changing membrane potential and, in a spiking neuron, the timing or absence of action potentials. Spatial summation concerns inputs at different locations; temporal summation concerns inputs at different times. A useful question is whether individually ineffective inputs can act together, and whether an inhibitory postsynaptic potential changes that cooperation. The answer depends on location, timing and the receiving neuron's state.
A synaptic potential is a voltage response, whereas synaptic conductance describes activated ion channels. With inward-positive electric current, the contribution of input isHere is its synaptic conductance, its reversal potential and the local membrane potential. The driving force is an electric potential difference. An EPSP generally brings the membrane potential toward a more positive reversal potential, but its driving force shrinks during depolarization. An IPSP need not produce hyperpolarization: a reversal potential above rest but below the neuronal firing threshold can produce depolarization while opposing a larger excursion. At , the added synaptic conductance initially carries zero electric current yet can cause shunting inhibition of another input.[ref]
Two distinct nonlinearities matter. Even a passive cell membrane can show sublinear synaptic integration when added synaptic conductances reduce driving force and effective electrical resistance. Active voltage-gated ion channels and NMDA receptors can instead amplify sufficiently concentrated inputs and produce a dendritic spike. Neither summing prescribed electric currents nor adding separate measured EPSPs is an exact universal rule for a branching neuron.[ref]
1.4 Limitations of the Leaky Integrate-and-Fire Model. §1.4.2 and §1.4.4: shunting, saturation and active dendritic interactions
Synaptic potential 2026-10-14
A synaptic potential is a postsynaptic change in membrane potential caused by activity at a synapse. Unlike the regenerative action potential, a passive synaptic potential is graded: its size depends on input strength, the initial membrane potential and the receiving cell membrane's properties. Local voltage changes can decay before reaching the soma; their timing and overlap help determine whether an action potential follows. See Ion Channels and the Electrical Properties of Membranes.
Depolarization means that the interior becomes less negative relative to the exterior; hyperpolarization means that it becomes more negative. Excitation and inhibition instead describe whether an input promotes or opposes postsynaptic action potential generation. An inhibitory postsynaptic potential can be depolarizing, and shunting inhibition can occur with no voltage change at rest. The receptor, permeating ions, ionic gradients and reversal potential matter. See Purves and colleagues: excitation, inhibition and depolarizing inhibition.
A worked passive model treats the receiving membrane as one compartment with capacitance , leak conductance , and activated synaptic conductances :All electric currents are inward-positive. Each term vanishes at its reversal potential ; . With constant parameters, the ordinary differential equation hasHere is total conductance, is effective electrical resistance, is the steady state and the time constant. Without imposed electric current, is a conductance-weighted average of the reversal potentials. This approximation omits spatial structure, changing ionic gradients and active voltage-gated ion channels; it calculates passive voltage responses, not actual action potential waveforms. See 3.1 Synapses for the mechanism behind the terms; the inward-positive convention here reverses that source's synaptic-current sign.
Take the same illustrative leak and capacitance as under shunting inhibition, start at and set . Opening with gives and . Its initial inward electric current is . Adding with changes to and . This is shunting inhibition of the same excitatory drive.
For comparison, with alone gives : hyperpolarization. With instead, it alone gives : depolarization. Yet adding this depolarizing conductance to the excitatory drive lowers that drive's from to . At an illustrative firing threshold , its electric current is , opposing threshold approach. The combined trace initially rises faster than the excitatory drive alone, before settling below it. Thus the sign of a voltage change at rest alone does not determine excitation or inhibition; a claim about firing must specify input strength, timing and the neuron's state.
Synaptic release probability 2026-10-14
Synaptic release probability is the probability of release at a specified site during a specified opportunity, such as one presynaptic action potential. It depends on the site's state and conditions; it is not the probability that the receiving neuron fires. In the example under synaptic vesicle, refers to one available site, whereas refers to any of four independent sites releasing.
Synaptic vesicle 2026-10-14
A synaptic vesicle is a small membrane-bounded compartment in a presynaptic terminal that stores neurotransmitter for release. Fusion with the cell membrane exposes its contents to the synaptic cleft; the packet supplied by one synaptic vesicle is a quantum of release. Quantal neurotransmitter release refers to these discrete packets, rather than the release of one molecule at a time. The postsynaptic response to a packet can vary with its contents, receptors and recording conditions. See Purves and colleagues: vesicles as the source of transmitter quanta.
The useful cycle is filling, preparation for fusion, calcium-triggered exocytosis, and recovery of membrane and proteins through endocytosis for reuse. Different recovery routes occur; recycling need not preserve a particular synaptic vesicle as an identifiable container throughout. Limited availability of prepared synaptic vesicles can reduce release during repeated stimulation, while changes in synaptic release probability can also change successive responses. See Basic Neurochemistry: secretion machinery and vesicle reuse and 3.1 Synapses.
For an illustrative calculation, assume four release sites, each with one prepared synaptic vesicle, each releasing with synaptic release probability during one presynaptic action potential. Assume independent Bernoulli trials and at most one release per site. The released packet count has a binomial distribution:The probability of no release is ; at least one release has probability . An expected value of one packet does not mean that every action potential releases one packet. If each packet contributes a stipulated conductance increment and increments add, the expected value of that increment is , with zero increment on about of trials. These assumptions are a teaching model: shared calcium fluctuations, unequal sites, depletion and nonlinear receptor responses can invalidate them.
Temporal summation 2026-10-14
Temporal summation is overlap of responses to inputs arriving at different times. It can occur at one repeatedly activated synapse or across several synapses; it is not defined by reuse of a particular contact. For prescribed electric current inputs in a passive compartment, residual depolarization from earlier pulses changes the voltage reached by later pulses. The membrane time constant sets how rapidly that residual decays, while the duration of synaptic conductance and spatial filtering by a passive dendritic cable can add other timescales.
For the diagram, write , choose inward-positive imposed electric current , and use the ordinary differential equationA rectangular pulse of amplitude and duration , starting from rest, ends withAfterwards its contribution decays as . The superposition principle therefore gives, at the end of the third pulse with onset spacing ,For this is , so the peak membrane potential is . For it is , giving . Both protocols inject of electric charge; equal charge does not imply equal peak voltage because the leak drains charge while it is delivered.
In the adjacent-pulse case, the illustrative neuronal firing threshold is crossed at . A leaky integrate-and-fire model would emit its first event there and reset, so its later trajectory would differ from the passive diagram. The widely spaced train never reaches that threshold. Thus changing input timing alone can change whether an event occurs. A real neuron's neuronal firing threshold is also state-dependent, and synaptic conductance pulses are not prescribed electric current pulses.[ref]
Measured responses to repeated presynaptic action potentials may also change through synaptic plasticity. A larger second response can therefore reflect a stronger second input as well as residual postsynaptic voltage. To isolate passive temporal summation, compare known injected electric current waveforms with their single-pulse responses under stable recording conditions; to test actual synapses, measure whether input efficacy changes. These are proposed discriminating comparisons, not additional controls claimed for the slice experiment.[ref]
Two-state ion-channel gating Created 2026-10-14 Updated 2026-10-14
Two-state ion-channel gating models an individual gate as a random switch between closed and open states. Write for its open probability; this is the in the header equation. An individual gate's state is always closed or open, rather than partly open. A population of identical gates can have a fraction open near , and averaging repeated identically prepared trials estimates the same probability. A finite population's observed fraction fluctuates. See Purves and colleagues, Neuroscience, 2nd edition (2001): Ion Channels Underlying Action Potentials for single-channel steps and their population averages.
At fixed membrane potential , let constant rates govern closed-to-open and open-to-closed transitions respectively, in . This is a two-state continuous-time Markov chain. Over a short interval , an initially closed gate opens with probability , and an initially open gate closes with probability . Gain minus loss gives the deterministic ordinary differential equation for the probability:Here is the fixed-voltage limiting open probability, and is a time constant. The ratio of the rates fixes the limit, while their sum fixes the speed. With initial probability ,For a short derivation, subtract : the deviation obeys , yielding the exponential function. After one time constant, of the initial deviation remains. The solution stays between and , so it remains a valid probability. The rate and time constant formulations are described in Gerstner and colleagues, Neuronal Dynamics, §2.2.2: transition rates and channel kinetics.
For a worked toy condition A, choose and . Then , , andIn a separately prepared condition B, choose , and the same . Now , , and . Condition B approaches a higher limit more quickly. These are two stipulated constant-rate conditions with held fixed in each experiment, not an empirical function relating rates to voltage or a sequential switch between conditions. The initial need not be the limiting probability at the newly imposed voltage.
Two-state ion-channel gating: two constant-rate relaxation conditions
. Original computed probability curves, both starting at . Dashed lines show the limiting open probabilities and ; dotted lines mark time constants and . The dot marks condition A at , where . Smooth curves represent open probability or population averages, not an individual gate's random state trace or an ionic electric current. Details.In the Hodgkin-Huxley model, the rates depend on membrane potential: and . Its is the limit for voltage held at that . During an action potential, changing changes the rates and gates feed back onto through ionic electric currents; substituting the present voltage into the constant-rate solution does not solve that coupled system. Gating describes availability of a conducting pathway. Even an open ion channel carries zero net ionic electric current at its reversal potential.
The useful bridge is from abrupt random molecular events to a smooth population prediction. A channel requiring several independent permissive gates in an ion channel has an open probability equal to their product; this can make channel availability much smaller than each gate's availability. The Hodgkin-Huxley model uses and for sodium and potassium electrical conductances, respectively.
Voltage-gated ion channel 2026-10-13
A membrane channel whose opening depends on membrane potential. Regenerative activation and subsequent inactivation or opposing currents help produce an action potential.





