Topics (384k) Articles (398k) Users (410) Discussions (242) Comments (383) Files (13k) New article
A mass analyzer is the part of a mass spectrometer that makes ions distinguishable or selectively transmits them according to mass-to-charge ratio. The measured coordinate can be position, arrival time or transmission under a specified field setting. A separate mass spectrometer detector records the resulting signal.
A quadrupole mass analyzer selects trajectories using combined static and time-varying electric fields: chosen mass-to-charge values remain on stable paths while others are lost from the transmitted beam.[ref] A time-of-flight mass spectrometer instead encodes the ratio in arrival time after acceleration. Different physical designs can therefore provide the same kind of ionic-mass information through different observables.
An original magnetic example exposes an important assumption. For speed perpendicular to a uniform magnetic field , balancing the Lorentz force and circular acceleration givesIf the incoming ions have the same selected speed and charge, mass values in the ratio give bending radii in that ratio, about . But if ions instead start negligibly slowly and gain energy from the same electric potential difference , substituting gives . Their radius ratio is then . The initial-condition choice changes the mapping.
Analysis requires this mapping and its assumptions, not just separated peaks. Mass resolving power describes the ability to distinguish nearby peak coordinates under a stated width criterion; accurate assignment of those coordinates additionally needs instrument calibration and the correct charge-state interpretation.
A mass spectrometer detector turns arriving ions into a recorded electrical signal. It is distinct from the mass analyzer that makes mass-to-charge ratio information distinguishable. The measured response can depend on collection, conversion and amplification as well as on how many ions arrived.
A Faraday cup collects electric charge directly. Ideally, a flux of ions with known charge gives . For singly charged positive ions per second, the current is , about . Escaping secondary electrons and background currents must be accounted for when inferring particle delivery.[ref]
An electron multiplier instead uses secondary emission to amplify the initial conversion signal. The manufacturer's detector description shows discrete dynodes, a continuous-dynode alternative, and a conversion dynode before the multiplier.[ref] In an illustrative equal-stage model, ten stages with mean yield give mean gain . This is a model calculation, not a measured gain for a named instrument.
Detector gain and detection efficiency answer different questions: the size of an output event and the probability of registering an arriving ion. Increasing gain cannot recover missed ions. At high signals, mass spectrometer detector saturation can also invalidate proportionality between ion delivery and recorded response. Quantitative peak comparisons therefore need a tested response range and appropriate instrument calibration, not merely a large signal.
A computer virus is self-replicating code that propagates by becoming part of host computer programs or suitable files. Its replication depends on the host's execution context. This distinguishes it from a self-contained computer worm, although both are conventionally grouped as malware.[ref]
Malware and virus entries in the NIST Computer Security Resource Center glossary. Virus definitions and NIST SP800-83r1 section2.1, replication through host programs or data files
Replication and any additional harmful effect are separate features. A computer virus can make unauthorized changes simply by incorporating itself into another host; a dramatic data-destruction effect is not necessary to recognize that replication mechanism.
For an original counting example, imagine ten archived copies of the same infected host file on an isolated storage medium. That is ten stored artifacts, not evidence of ten running processes or ten infected computers. Conversely, one executing host can affect more than one stored artifact. Counts of detected files, affected machines and active executions measure different things.
The biological analogy is useful only in a limited sense: a computer virus depends on a host context for reproduction, but its mechanism is computation and file modification. Digital evidence about copies and execution should support the particular incident claim being made, rather than treating every occurrence of a byte pattern as a separate observed infection event.
A MALDI matrix is material combined with an analyte to assist its release and ionization during MALDI. In ultraviolet MALDI, the MALDI matrix absorbs light at the laser wavelength, coupling the pulse to a sample that need not absorb efficiently on its own. Its chemical and physical properties influence the resulting mass spectrum.
An early experiment compared amino acids at different laser wavelengths. In a mixture of alanine and tryptophan irradiated at , an alanine molecular-ion signal appeared at about one tenth of the irradiance required for alanine alone. Absorbing tryptophan therefore supplied a concrete matrix-assisted effect; the useful observation was the changed ion-production threshold.[ref]
Influence of the Wavelength in High-Irradiance Ultraviolet Laser Desorption Mass Spectrometry of Organic Molecules by Michael Karas and others. p. 2937, Figure 5 and “Matrix-Assisted Laser Desorption”.
An idealized optical model illustrates why absorption matters without predicting ion yield. If a uniform layer has absorption coefficient and thickness , the Beer-Lambert law gives absorbed fraction , ignoring reflection and scattering. Optical depths and give approximately and . These are absorbed-light fractions, not the fractions of analyte molecules that become detected ions; chemistry and subsequent transport still intervene.
The MALDI matrix can also affect spatial interpretation. A tissue-imaging study at sampling found matrix-crystal clusters larger than the sampling scale; their distribution contributed granular structure to the ion image.[ref]
Normalization in MALDI-TOF imaging datasets of proteins: practical considerations by Sören-Oliver Deininger and others. Rat-brain dataset and Figure 1, comparison of matrix morphology and mass-spectrometric image.
Matrix preparation is consequently part of the measurement, not an invisible supporting surface. Mass spectrometry image normalization may reduce some common intensity variation, but it cannot make every matrix-dependent response an absolute concentration measurement.Phase-contrast magnetic resonance imaging estimates motion from differences in the phase of nuclear magnetic resonance signals acquired with controlled magnetic field gradients. The encoding measures a component of velocity, with its sign set by the gradient and reconstruction convention. A 1982 paper described an early flow-sensitive phase-encoding approach.[ref]
For a constant-velocity teaching model, write position along the encoding direction as . If is the effective gradient, including refocusing signs, thenHere is the gyromagnetic ratio in radians per second per tesla, and is the gradient first moment. With balanced zeroth moments, two encodings giveThese equations are an explicit idealized derivation, not a claim that every measured voxel contains one uniform velocity.
Define the velocity encoding limit by . If it is , a corrected phase difference of corresponds to under the chosen sign convention. Phase wrapping modulo causes an ambiguity beyond the encoding range, related to aliasing.
A 1991 gated study measured differently timed cerebrospinal fluid motion in ventricular and subarachnoid compartments over the cardiac cycle.[ref]
Normal flow patterns of intracranial and spinal cerebrospinal fluid defined with phase-contrast cine MR imaging by D. R. Enzmann and others. Abstract; 16 flow-encoded images per cardiac cycle
Opposite velocities during equal parts of a cycle can average to zero despite substantial oscillatory motion. A volumetric flow rate additionally requires integrating the normal velocity across a defined cross-section; peak speed alone does not supply transported volume.Magnetic resonance velocity encoding makes a component of motion measurable through the phase of a nuclear magnetic resonance signal. Controlled magnetic field gradients give different phase shifts to spins with different trajectories. Phase-contrast magnetic resonance imaging compares encodings to extract a velocity component, rather than interpreting ordinary image brightness as speed.[ref]
A flow velocity zeugmatographic interlace for NMR imaging in humans by P. R. Moran. Primary abstract: phase-sensitive flow encoding and reconstructed motion information
In an original idealized model, assume constant velocity along one encoding axis and effective gradients with equal gradient zeroth moments. Then the encoding difference obeyswhere is the angular gyromagnetic ratio and is the gradient first moment difference. For , and , this gives . These stipulated values illustrate the conversion, rather than a particular scanner experiment.
Reversing the moment difference reverses the phase sign under this convention. Reducing its magnitude decreases sensitivity to a given velocity while increasing the velocity encoding limit. A measured voxel can contain a range of velocities, and background phase or phase aliasing can complicate reconstruction.
Computational learning theory studies what an algorithm can learn under an explicit observation model, accuracy requirement and resource bound. Sample complexity measures how much information is needed; time complexity measures the computation used to turn it into a predictor. A class can admit statistically sufficient samples while presenting a difficult computational Search problem.
In realizable probably approximately correct learning, labelled examples are sampled independently from a fixed but unknown distribution and some hypothesis in the class labels them perfectly. The learner must return a hypothesis whose true error is at most with probability at least . For a finite class , any consistent learner satisfies this guarantee whenIndeed, a fixed hypothesis with error greater than matches all examples with probability at most ; a union bound over proves the claim. The argument bounds information requirements, but does not supply an efficient method for finding a consistent hypothesis.
In online learning, a learner chooses before observing the round's loss function . Its external cumulative regret against a fixed action set isNo-regret learning seeks a guarantee , often in expectation for a randomized algorithm, under stated feedback and adversary assumptions. The average excess loss then tends to zero. The comparator is the best single action in hindsight; it does not choose the best action separately on every round.
For example, against two prediction rules, an exponential-weights learner starts with equal weights and multiplies rule 's weight by after seeing all rule losses. Sampling in proportion to the weights gradually shifts probability toward better rules. For losses in , an appropriate learning rate gives an order- expected bound for this fixed two-rule setting. This compares performance even without independent observations from one fixed distribution; it does not guarantee small absolute loss when every rule predicts badly.
A word embedding represents a word by a vector, usually learned so that relationships in the data become useful relationships between vectors. A vocabulary of words can be stored as a matrix with rows and columns: selecting a word selects one row. Unlike a separate indicator for each word, a dense representation can share predictive information across words.
For example, training a neural language model can place words occurring in similar contexts near one another, making evidence about “cat” useful when predicting contexts involving “dog”. This is statistical similarity, not a guarantee of synonymy: opposite words can occur in similar contexts too. The 2003 neural probabilistic model learned these vectors jointly with next-word probabilities.[ref]
A Neural Probabilistic Language Model by Yoshua Bengio and others. abstract and §2, shared word-feature matrix
A neural language model uses a neural network to assign a probability distribution to language sequences. An autoregressive model factorizes the probability of words asTraining by maximum likelihood estimation rewards the observed next words; generation repeatedly samples from the conditional distribution. If a two-word sequence has first-word probability and conditional second-word probability , its joint probability is .
Yoshua Bengio and coauthors' 2003 model jointly learned a distributed representation of words and a neural probability predictor. Sharing representation parameters allowed similar contexts to inform one another, rather than treating every observed word sequence as an unrelated event.[ref]
A Neural Probabilistic Language Model by Yoshua Bengio and others. abstract and §2, model architecture
Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 2. You can publish local OurBigBook lightweight markup files to either OurBigBook.com or as a static website.Figure 3. Visual Studio Code extension installation.Figure 5. . You can also edit articles on the Web editor without installing anything locally. Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension. - Infinitely deep tables of contents:
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact





