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In bent molecular geometry, two neighbours and their central chemical atom form a noncollinear triangle, with an interior bond angle strictly between $0^{\circ }$ and $180^{\circ }$. Water, ${\mathrm{H}}_2\mathrm{O}$, is the standard example. The NIST CCCBDB experimental water entry, internal coordinates, citing Hoy and Bunker (1979) gives the equilibrium H–O–H bond angle as $104.4776^{\circ }$ with quoted uncertainty $0.0019^{\circ }$, usually rounded to $104.5^{\circ }$.

The oxygen in water has two bonding electron domains and two lone pairs. Its ideal electron pair geometry is tetrahedral, while the three atomic nuclei give bent molecular geometry. Three points always lie in a plane; this does not make the four-domain scaffold planar. Nor does the word bent by itself determine an electron domain count: the same atomic shape can arise from other domain arrangements.

In an illustrative model with two equal bond-dipole contributions of magnitude $p$ separated by bond angle $\theta$, their sum of vectors points along the bisector and has magnitude $2p\cos (\theta /2)$. At $180^{\circ }$ it vanishes; at $104.4776^{\circ }$ it is approximately $1.2247p$. This ratio is a geometric calculation, not a prediction of water's measured electric dipole moment. The entire electron density, including contributions represented by lone pairs, matters. Water is a polar molecule; chemical polarity helps explain its interactions with other polar molecules. See McMurry, Organic Chemistry, §2.2: water, lone-pair contributions, and polarity.

Chemical polarity concerns unequal distribution of electron density in a chemical bond or molecule. A polar molecule has a permanent electric dipole moment; the effects of individual bonds must be combined with their spatial arrangement. In a symmetric linear carbon dioxide molecule, opposing bond-dipole contributions cancel. In water, its bent molecular geometry prevents that cancellation, giving a permanent electric dipole moment.^[ref]

A permanent electric dipole moment gives evidence of separated positive and negative electric charge in an overall neutral molecule. This is a more direct probe of chemical polarity than an electronegativity table. For hydrogen chloride, NIST lists about $1.109$ debye for the lowest vibrational state and $1.093$ debye for the equilibrium value. They describe different averaging conventions, not two contradictory measurements. The NIST WebBook traces the vibrational value $1.1085$ debye to molecular-beam electric-resonance measurements in 1970.^[ref][ref]

How does molecular beam electric resonance reveal an electric dipole moment? A source and apertures form a beam of molecules in vacuum. A first nonuniform electric field, A, selects quantum states through their different Stark effects. In a central region, C, electrodes supply a nearly uniform electric field and applied radiation drives transitions at selected frequencies. A second nonuniform electric field, B, analyzes the outgoing quantum states; a detector measures the rate of arriving molecules. In a transmission-loss arrangement, resonant radiation transfers some molecules to a quantum state rejected by B, so the measured arrival rate dips. The observable is a change in detected molecules as the radiation frequency is scanned, rather than light absorption itself. This general apparatus description is documented in a later experimental thesis; it is not a reconstruction of the exact 1970 HCl instrument.^[ref]

The inference comes from how transition frequencies change with the known electric field. The interaction $-\mathbf{\mu }\cdot \mathbf{E}$ couples the electric dipole moment to the electric field; fitting the quantum mechanics of the relevant rotational states extracts its magnitude. A free rotating molecule need not show a first-order shift proportional to $|\mathbf{E}|$: the weak-field Stark effect can be quadratic. The diagram uses a simplified rigid rotor, with $B$ an energy constant, to illustrate this behavior. It omits the fine details of actual spectra.

Useful controls include scans with the radiation off to measure the baseline arrival rate, repeated scans at several calibrated electric fields, and agreement between independently assigned transitions. These are methodological checks, not claims about undocumented steps of the 1970 experiment. Field calibration and state assignment limit the inferred electric dipole moment. The published 1970 abstract confirms analysis of HCl and DCl beam-resonance spectra and combination with infrared spectroscopy intensities to obtain a distance-dependent electric dipole moment; its full apparatus and calibration record were unavailable here.^[ref]

Even an accurately measured electric dipole moment is not an absolute partial atomic charge. Replacing a hydrogen chloride molecule by two point electric charges $\pm q$ separated by bond length $r$ gives $|\mu |=|q|r$. Using $1.109$ debye and $r=1.27455\times 10^{-10}\mathrm{m}$ gives $|q|\approx 0.181$ times the elementary electric charge. This is an effective two-point model, combining a vibrationally averaged electric dipole moment with an equilibrium bond length, not a unique partition of the actual electron density or a measured “18.1 percent ionic bond”.^[ref]

For a molecule with several chemical bonds, molecular geometry can cancel opposing contributions to the total electric dipole moment. Carbon dioxide illustrates why an overall nonpolar molecule need not have unpolarized individual chemical bonds. An electronegativity comparison helps anticipate local bond polarization; the measured molecular electric dipole moment tests the entire electric charge distribution.

The electric dipole moment measures the first spatial moment of signed electric charge. For localized point charges $q_i$ at positions ${\mathbf{r}}_i$, or an integrable charge density $\rho (\mathbf{r})$ with a finite first moment, define^[ref].

The electric dipole moment is a vector with SI units $\mathrm{C}\mathrm{m}$: coulombs times length in metres. Opposite electric charges can cancel in $Q$ while contributing in the same direction to $\mathbf{p}$. For a neutral pair with positive electric charge $q>0$ at ${\mathbf{r}}_{+}$ and negative electric charge $-q$ at ${\mathbf{r}}_{-}$,Thus the electric dipole moment points from negative to positive electric charge, not along the attraction between the two point charges. ^[ref].

Changing the coordinate origin changes the position vectors, not the physical electric charge distribution. If the new origin is at $\mathbf{a}$ relative to the old origin, ${\mathbf{r}}_i^{\prime }={\mathbf{r}}_i-\mathbf{a}$, so direct substitution givesConsequently charge neutrality makes the electric dipole moment independent of the origin. For a system with nonzero total electric charge, always specify the origin: a single point charge at the old origin has $\mathbf{p}=0$ but ${\mathbf{p}}^{\prime }=-Q\mathbf{a}$. This is coordinate bookkeeping, not a newly created electric dipole. The full electric potential stays the same at the same physical point; the terms of its electric multipole expansion and the observation coordinates change together.

As a stipulated numerical example, put $+2\mathrm{nC}$ at $(1,0,0)\mathrm{mm}$ and $-2\mathrm{nC}$ at $(-1,0,0)\mathrm{mm}$. Their total electric charge is zero and $\mathbf{p}=(4\times 10^{-12},0,0)\mathrm{C}\mathrm{m}$. Translating the origin by $(3,-2,0)\mathrm{mm}$ leaves this electric dipole moment unchanged. Adding $+1\mathrm{nC}$ at the old origin instead gives $Q=1\mathrm{nC}$ and ${\mathbf{p}}^{\prime }=(1,2,0)\times 10^{-12}\mathrm{C}\mathrm{m}$. Distinguishing these two cases prevents the mistaken claim that every electric dipole moment is independent of the origin.

The usefulness of the electric dipole moment is compression: many internal electric charges determine one vector governing the leading distant electric potential of a neutral localized object when $\mathbf{p}\ne 0$. ^[ref]. A polar molecule need not literally contain two point charges; its atomic nuclei and electron density collectively give an electric dipole moment. For example, the chemical polarity of water reflects its bent molecular geometry, whereas the symmetric linear molecular geometry of carbon dioxide makes its permanent electric dipole moment vanish. ^[ref]. A collection of such electric dipole moments per unit volume gives electric polarization. ^[ref].

Hydrophilicity describes affinity for water. Regions with chemical polarity or electric charge can interact favorably with water, including through hydrogen bonds where suitable groups are present. Hydrophilic regions of membrane-forming phospholipids face the water on either side of a lipid bilayer. Such affinity does not mean forming covalent bonds with every neighboring substance, nor does it require a net negative electric charge. See Alberts et al.: the chemical components of a cell.

Phospholipids are lipids containing a phosphate group as part of their structure linked by covalent bonds. The familiar membrane-forming phospholipids are amphiphilic: a hydrophilic head region with chemical polarity coexists with a hydrophobic, largely nonpolar hydrocarbon region. These descriptions refer to different parts of the same molecule, not to two separate substances. See IUPAC Gold Book: phospholipids and IUPAC Gold Book: amphiphilic.

A typical two-chain glycerophospholipid provides a useful example: a glycerol scaffold carries two fatty acid-derived acyl groups through ester linkages, plus a phosphate-containing head region. Phosphatidylcholine is one example. This scaffold describes an important subclass, rather than all phospholipids: sphingomyelin has a different backbone, and even glycerophospholipids need not all have two acyl groups. See IUPAC–IUB, Nomenclature of Lipids (1976), Lip-1.5 and Lip-2.1–2.6.

Polar does not mean negatively charged overall. At near-neutral pH, phosphatidylcholine is zwitterionic: its phosphate region carries negative electric charge and its choline region positive electric charge, with zero net electric charge for the molecule. Counting those opposite charges gives $(-1)+(+1)=0$; it does not remove their local interactions with water. See Lodish et al., Molecular Cell Biology: membrane lipids.

In a lipid bilayer, two membrane leaflets orient their hydrophilic heads toward the water on either side and their hydrophobic chains toward the shared interior. The hydrophobic effect helps explain this organization through the free energy of the water and lipids together. It is not a special repulsive chemical bond between chains and water. Which organization is favored also depends on molecular geometry, temperature, concentration, and the surrounding chemical solution; a phospholipid label alone does not guarantee a lipid bilayer. See Alberts et al., Molecular Biology of the Cell: the lipid bilayer.

This organization supplies a flexible barrier for compartments. A fluid lipid bilayer allows lipids to undergo diffusion within each membrane leaflet; barrier function therefore coexists with motion of molecules, as in the fluid mosaic model. It is not completely impermeable: small nonpolar molecules such as molecular oxygen and carbon dioxide cross much more readily than ions. In a cell membrane, ion channels and other membrane transport proteins provide selective routes; the existing membrane transport article explains their driving forces. See Alberts et al.: principles of membrane transport.

In 1925, E. Gorter and F. Grendel extracted lipids from red blood cells and compared the surface area of a one-molecule-thick film on water with the estimated total surface area of the red blood cells. Their table gave ratios near two, supporting a two-layer covering; they also proposed heads facing the aqueous surroundings on both sides. The inference depends on recovering the relevant lipids, estimating the red blood cell surface area correctly, and comparing compatible packing in the film and the cell membrane. It was indirect evidence, not an image of the lipid bilayer. The paper itself notes possible losses during evaporation. See Gorter and Grendel, On Bimolecular Layers of Lipoids on the Chromocytes of the Blood, Journal of Experimental Medicine 41 (1925), 439–443.

In tetrahedral molecular geometry, four neighbouring chemical atoms surround a central chemical atom in the directions of the vertices of a tetrahedron. In the regular idealization, the central atomic nucleus lies at the centre of a regular tetrahedron, and every pair of chemical bonds makes the same bond angle. Methane, ${\mathrm{CH}}_4$, provides the standard example: its carbon has four bonding electron domains and no lone pair. See Chemistry 2e, §7.6: tetrahedral methane.

The exact ideal bond angle follows from four directions proportional to $(1,1,1)$, $(1,-1,-1)$, $(-1,1,-1)$, and $(-1,-1,1)$. Each has squared Euclidean norm $3$, and each distinct pair has dot product $-1$. HenceThis is a statement about a regular tetrahedron, rather than a universal exact value for every molecule labelled tetrahedral. It also explains why a cross-shaped flat drawing with $90^{\circ }$ gaps is misleading: four equal directions can spread out more evenly in three dimensions.

The same vectors sum to zero. Consequently, four equal bond-dipole contributions along those directions cancel. The symmetric methane molecule is nonpolar, but a tetrahedral shape alone does not imply a nonpolar molecule: replacing one neighbour can make the electronic distribution and bond contributions unequal. Chemical polarity depends on both molecular geometry and electron density. See McMurry, Organic Chemistry, §2.2: molecular dipoles and methane.

A zwitterion has opposite formal electric charges in different regions of a molecule, with zero net electric charge. Phosphatidylcholine provides a membrane-related example. This is stronger than merely having chemical polarity through fractional partial atomic charges. See IUPAC Gold Book: zwitterions.