Topics (384k) Articles (398k) Users (410) Discussions (242) Comments (383) Files (13k) New article
A stilbene isomer composition measurement estimates how much cis-Stilbene and trans-Stilbene a preparation contains. Total stilbene amount is insufficient: the two geometric isomers share a molecular formula and molar mass, while differing in arrangement around the central double bond. NIST records distinguish their structures and identifiers.[ref]
cis-Stilbene in the NIST Chemistry WebBook. Identity, Z-isomer structure and stereoisomer cross-reference
[ref]trans-Stilbene in the NIST Chemistry WebBook. Identity, E-isomer structure and stereoisomer cross-reference
An original two-wavelength model illustrates the inference. Measure a homogeneous solution in a fixed-path spectrophotometer, subtract the appropriate background and divide absorbance by path length. If only these two absorbing species contribute and the Beer-Lambert law applies,The molar absorption coefficients must be calibrated in the same solvent and conditions. Their values are not supplied by the shared molecular formula.
Writing , the solution for isIn chosen consistent scaled units, take the coefficient rows and and observations . Then , and . The modeled cis fraction is . These coefficients and observations are illustrative, not experimental stilbene spectra.
The determinant condition is also a measurement-design warning. If both wavelengths respond to the two isomers in the same proportion, the equations contain only one independent composition constraint. A very small determinant relative to the coefficient scale can amplify reading or calibration errors. More repeated measurements cannot restore information missing from the response model.
A third wavelength provides a stilbene composition consistency residual: compare its observation with predicted from the first two. A discrepancy can reveal an unmodeled absorber, a changing preparation, an incorrect background or incompatible coefficients, without identifying which cause occurred. Timing and illumination should be controlled when testing a preparation capable of photoisomerization. Chemical identity, calibration, measurement geometry and model adequacy are separate requirements for a defensible composition estimate.
Progesterone is a steroid hormone produced prominently by the corpus luteum after ovulation and by the placenta during pregnancy. It helps transform and maintain the endometrium in a state that supports implantation and subsequent pregnancy. Its withdrawal, alongside other hormonal changes, contributes to menstruation when pregnancy is not established.[ref]
Biology 2e by Mary Ann Clark and others. Section 43.4, ovarian and uterine hormonal control
Like other steroid signals, progesterone can act through a nuclear receptor to change gene expression. Its effect is therefore not merely the presence of a substance in blood: transport, receptor availability and tissue state shape the response. A post-ovulatory progesterone rise and an estrogen-driven proliferative phase describe different parts of the coordinated ovarian and uterine cycle.
Estrogens are a class of steroid hormones that includes estradiol, estrone and estriol. They participate in several physiological processes, including development of reproductive tissues and regulation of the menstrual cycle. The class name identifies a family of signals, rather than one uniquely specified chemical.[ref]
Anatomy and Physiology 2e by J. Gordon Betts and others. §17.8, ovarian estrogens and their physiological functions
Estrogens also contribute to the growth of long bones, illustrating why their effects extend beyond reproductive tissues.[ref]
Estrogen in the NCI Dictionary of Cancer Terms. definition, sex characteristics and long-bone growth
An experimental measurement consequently needs to identify both the substance being measured and the response of interest. An estradiol assay does not automatically measure every estrogen or summarize all of their biological effects.For example, a 1983 study sampled five women at two-hour intervals over five days around midcycle. Peak estradiol levels were temporally associated with the onset of luteinizing hormone and follicle-stimulating hormone surges.[ref]
Hormonal dynamics at midcycle: a reevaluation by J. D. Hoff and others. Abstract, sampling schedule and temporal association
This connects a specified member of the class to a measured time series; temporal association alone does not establish the direction of causation.Pregnenolone is a 21-carbon steroid with a position-3 beta-oriented hydroxyl group, a position-20 ketone and a double bond between carbon positions 5 and 6. Its molecular formula is .[ref]
A key early step of steroid hormone synthesis converts cholesterol into pregnenolone. The cholesterol side-chain cleavage enzyme first hydroxylates the substrate at two positions and then cleaves the side chain, producing pregnenolone and 4-Methylpentanal. This is a sequence of oxygen-dependent reactions with electron transfer, not simply spontaneous breaking of a carbon chain.[ref]
Cholesterol side-chain cleavage enzyme in IUBMB Enzyme Nomenclature. EC 1.14.15.6, reactions 1a–1c and Comments
The products illustrate a compact material-balance check. The 27 carbons of cholesterol divide into 21 in pregnenolone and six in the aldehyde product: . This count alone does not balance oxygen or hydrogen, but it makes clear why a pathway can retain the four-ring steroid framework while shortening its side chain. Identifying pregnenolone in a sample establishes a particular chemical intermediate; its presence alone does not measure the rate of every downstream hormone-producing reaction.
A bile acid is a steroid-derived amphiphilic compound with a carboxyl-containing side chain. Its comparatively hydrophobic ring framework and polar groups help organize otherwise poorly water-soluble lipids in an aqueous environment.
Biological conjugation can convert the acid group into an amide, changing ionization and solubility behaviour. At relevant aqueous conditions, ionized forms are often called bile salts. The number and orientation of hydroxyl groups affect the balance between polar and nonpolar surfaces, so different bile acids need not have interchangeable physical properties.
Androstenedione is a 19-carbon steroid with ketone groups at carbon positions 3 and 17 and a double bond between positions 4 and 5. The structural name androst-4-ene-3,17-dione encodes these features. Its molecular formula is .[ref]
Androstenedione is also a substrate in steroid hormone synthesis. Aromatase converts it to estrone, with formate among the products. The enzyme record lists a separate reaction converting testosterone to estradiol; the two starting steroids and their products should not be conflated.[ref]
Carbon accounting gives a useful check on the first transformation: the substrate has 19 carbon atoms, whereas estrone has 18, and the remaining carbon appears in formate. That accounting describes only the carbon balance; the complete reaction also requires oxygen and reducing equivalents. Thus conversion to an estrogen involves a chemical rearrangement and oxidation process, rather than simply attaching a different biological label to the same steroid structure.[ref]
Aromatase in IUBMB Enzyme Nomenclature. reaction 2 and Comments
An RNA hairpin is a stem-loop formed when two regions of one RNA strand make base pairs, leaving an intervening unpaired loop. It is a local RNA secondary structure motif: covalent continuity runs through the loop while pairing brings separated parts of the sequence together. The motif does not require a second RNA molecule and need not describe the fold of the whole RNA.
For an original sequence illustration, consider
5'-GGCCUUCGGGCC-3'. Pair positions1–12,2–11,3–10 and4–9. The four pairs are G–C, G–C, C–G and C–G, leaving positions5–8, UUCG, as a four-nucleotide loop. Thus four pairs use eight nucleotides, and the loop supplies four more, giving twelve in total. The corresponding illustrative dot-bracket notation is ((((....)))). This proposed pairing is a structural example, not an experimental demonstration that an isolated sequence occupies only that conformation.A four-residue loop is an RNA tetraloop. Both the paired stem and the loop sequence influence stability. In a 2010 experiment, researchers optically melted24 stem–loop sequences containing common tetraloops and determined their thermodynamic parameters. Measuring absorbance as temperature changes connects sequence differences to an experimental folding transition rather than inferring stability from the number of pairs alone.[ref]
Thermodynamic characterization of naturally occurring RNA tetraloops by Justin P. Sheehy and others. Abstract and Materials and Methods: optical melting and thermodynamic analysis of24 sequences.
A two-state model makes RNA hairpin melting quantitative. If only folded F and unfolded U states are allowed, set , with and the molar gas constant. The folded fraction is . A stipulated gives and folded fraction ; equal free energies give . These model fractions are not the paper's measurements. Alternative folds, non-two-state transitions and assay conditions can require a richer interpretation.
A statistical population is the collection of units, outcomes or distributional cases about which an analysis seeks conclusions. A finite population may consist of fixed values , with population mean . A superpopulation model instead describes observations through a probability distribution.
These viewpoints support different sources of randomness. In sampling from a fixed finite population, selection is random even if each value is fixed. Under simple random sampling without replacement, every unit has inclusion probability , and the sample mean is unbiased for . The accessible sampling frame can differ from the target population, producing a coverage problem that a large sample alone cannot repair.
High-dimensional statistics studies inference when the number of variables or parameters is large relative to the number of observations, often allowing both to grow. The difficulty is structural rather than merely computational: with an design matrix and , the null space is nontrivial, so for every in that null space.
The data alone then cannot identify an arbitrary coefficient vector. Assuming a sparse vector of regression coefficients can make restricted recovery possible when the design matrix is injective on the allowed differences. Regularization encodes or exploits such structural assumptions. A fitted model with many parameters is therefore not automatically informative about every parameter; identifiability and uncertainty depend on the model's structure and sampling design.
A randomized mechanism satisfies differential privacy with parameters if, for every ordered pair of adjacent datasets and measurable output event ,Adjacency specifies the contribution of one individual, such as adding or removing one record. The probability is over the mechanism's randomness.
For an integer count query with sensitivity one under add/remove adjacency, releasing the count plus independent Laplace distribution noise of scale gives privacy. The ratio of output densities is at most by the triangle inequality. The guarantee limits distinguishability between neighboring inputs; it does not require publishing identical results or certify that every statistical estimate is accurate.[ref]
The Algorithmic Foundations of Differential Privacy by Cynthia Dwork and Aaron Roth. Definition 2.4 and Theorem 3.6, Laplace mechanism for counting queries
Geometric data analysis represents multivariate observations as weighted clouds of points, then studies their Euclidean geometry through distances, orthogonal projections and principal components. Principal component analysis applies this approach to numerical variables; correspondence analysis adapts it to a table of counts with its own weights and metric. Choosing the weights and metric is part of the analysis, since these choices decide which differences between observations count as large.[ref]
Geometric Data Analysis by Brigitte Le Roux and Henry Rouanet. Chapters 1–4, overview, correspondence analysis, Euclidean clouds and principal component analysis
For a column-centered data matrix with singular value decomposition , the first principal components give coordinates . They are the orthogonal projection onto the chosen principal directions. Rescaling one variable changes the distances and can change those directions: measurements in metres and millimetres should not receive different influence merely because the units were changed. The geometry must therefore be interpreted together with the scaling convention, rather than treating the resulting plot as an intrinsic picture of the observations.
Biostatistics develops and applies statistical inference to biological and health questions. Its problems include designing experiments, comparing treatments, measuring biological variation and analyzing survival or repeated observations. The experimental unit must match the independent unit of information: multiple measurements of one organism need not substitute for measurements of multiple organisms.
Suppose a randomized study observes an event in 10 of 100 treated participants and 20 of 100 controls. The estimated risk difference is , while the estimated relative risk is . These express different scales of comparison, and neither alone expresses its uncertainty. Assignment, follow-up and the definition of the event determine what effect can be estimated. For incomplete follow-up, methods from survival analysis distinguish observing no event yet from establishing that an event will never occur.
Mathematical statistics studies the mathematical properties of procedures for learning from data: estimation, statistical hypothesis tests and quantification of uncertainty under explicit statistical models. It asks what a method estimates, how its error behaves and which assumptions justify that behavior.
If are independent and identically distributed random variables with expected value and finite variance , the sample mean satisfies and . Independence removes cross-covariances in the second calculation. These identities explain why averaging can improve precision, while also exposing a limitation: strongly dependent observations may provide much less information. Theorems about estimators are therefore conditional statements about a sampling model, rather than universal guarantees for every dataset.
Econometrics uses statistical models to quantify economic relationships and to assess predictions or causal claims from economic data. The choice of variables and the mechanism generating observations matter as much as estimating the model coefficients.
For example, in a linear regression of log earnings on years of schooling, a slope corresponds to a fitted earnings ratio for one additional year. Interpreting that ratio as a causal effect needs more than a good fit: prior attainment or family circumstances may affect both schooling and earnings, creating confounding. Randomization, suitable instrumental variables or a credible natural experiment can support causal interpretation under additional assumptions. The numerical regression coefficient alone supplies an association within its model, not those assumptions.
Computational statistics develops and studies computational procedures for statistical inference. It includes numerical evaluation of likelihood functions, simulation from probability distributions and assessment of uncertainty when an exact symbolic calculation is unavailable. The statistical question and the numerical approximation both need error control.
For example, if independent simulations follow a model and has finite variance, the Monte Carlo estimator estimates , with variance . Halving its standard deviation therefore requires four times as many independent simulations. An optimization routine finding a maximum of a likelihood function and a simulation routine estimating an integral solve different computational tasks, even when both are steps in the same analysis.
Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 2. You can publish local OurBigBook lightweight markup files to either OurBigBook.com or as a static website.Figure 3. Visual Studio Code extension installation.Figure 5. . You can also edit articles on the Web editor without installing anything locally. Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension. - Infinitely deep tables of contents:
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact





