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Hall magnetohydrodynamics retains bulk ion inertia but freezes magnetic flux into the electron velocity ${\mathbf{u}}_e=\mathbf{u}-\mathbf{j}/(en)$. With constant density, negligible electrical resistivity and electron inertia, Gaussian units give $\mathbf{j}=c\nabla \times \mathbf{B}/(4\pi )$ and ${\partial }_t\mathbf{B}=\nabla \times [(\mathbf{u}-c\nabla \times \mathbf{B}/(4\pi en))\times \mathbf{B}]$. The ion velocity still satisfies the magnetohydrodynamic momentum equation. Neglecting that velocity gives electron magnetohydrodynamics, a further approximation rather than a synonym for the complete Hall system.

The Henderson-Hasselbalch equation estimates buffer solution pH using a weak acid's acid dissociation constant and the conjugate base to weak acid concentration ratio.

Its activity form is an exact rearrangement of the chosen chemical equilibrium relation. Write the acid dissociation step as $\mathrm{HA}\rightleftharpoons {\mathrm{H}}^{+}+{\mathrm{A}}^{-}$, with hydrated hydrogen ions understood in water and the solvent convention incorporated into the acid dissociation constant. For consistent standard states,Here each $a_i$ is a dimensionless thermodynamic activity at chemical equilibrium. Exactness refers to this specified acid dissociation constant relation and the chosen single-ion thermodynamic activity convention, not to identifying the ratio with quantities initially mixed. If water is instead written explicitly as a reactant, its thermodynamic activity must be treated consistently. See Hippler and Metcalfe, Using activities to correct the Henderson-Hasselbalch equation (2020), equations 3–4.

For a toy weak acid with stipulated pKa $5$, use the ideal dilute concentration approximation and put $r=[{\mathrm{A}}^{-}]/[\mathrm{HA}]$. The Henderson-Hasselbalch equation becomes $\mathrm{pH}\approx 5+{\log }_{10}r$:More conjugate base relative to weak acid means higher pH. Each tenfold increase in the ratio contributes exactly one to the calculated pH. The stipulated pKa is not a tabulated value for an identified substance.

The distinction between thermodynamic activity and concentration is explicit when $a_i={\gamma }_i[i]/c^{\circ }$, where ${\gamma }_i$ is an activity coefficient and $c^{\circ }$ is the reference concentration:Neglecting the final term gives the usual approximate Henderson-Hasselbalch equation. It is justified when the ratio of activity coefficients is sufficiently close to one, as in a suitable dilute ideal approximation. Ionic strength, including contributions from other dissolved ions, affects activity coefficients; a nominally dilute weak acid alone does not establish that all corrections are small. The ratio must use chemical equilibrium concentrations. Replacing these by prepared amounts or post-neutralization inventories is a further approximation, suitable only when subsequent redistribution is small. See Hippler and Metcalfe, concentration, activity, and analytical-concentration approximations.

The short derivation is to solve the acid dissociation constant relation for $a_{{\mathrm{H}}^{+}}$, take a negative base-ten logarithm, and use the definitions of pH and pKa. Its useful beauty is that a chemical equilibrium becomes a simple rule about a ratio: select a weak acid with pKa near the desired pH, then adjust the partner ratio. Scaling both partner concentrations equally leaves the ideal pH prediction unchanged, while changing buffer capacity. In practical buffer solutions, temperature, ionic strength, and the available inventories still matter.

Heterolysis assigns both bonding electrons to one fragment. For an initially neutral molecule, the resulting cation and anion define a different dissociation channel from homolysis; their isolated gas-phase energy differs from that of solvated ions.

A hydration shell is a solvation shell in water. The existing hydration of ions discussion describes preferential orientations around cations and anions.

Hydrochloric acid is an aqueous chemical solution of hydrogen chloride. The glycine titration model treats its dissociation into hydronium and chloride as complete, retaining both ions in the electric charge balance.

Hydronium is the ion formed when a water molecule accepts a proton. It provides the usual aqueous shorthand for the hydrogen ion used in pH calculations.

Consider a neutral monoprotic acid $\mathrm{HA}$ dissolved in water, with no added salts or other acids. Assume dilute ideal thermodynamic activities, fixed temperature, water thermodynamic activity one, and negligible self-ionization of water. Write $C_T$ for its analytical concentration, $c=C_T/c^{\circ }$ with $c^{\circ }=1\mathrm{mol}{\mathrm{L}}^{-1}$, and $\alpha$ for its weak acid dissociation fraction. Conservation of acid units and electric charge givesHere ${\mathrm{A}}^{-}$ is the conjugate base, and ${\mathrm{H}}^{+}$ is conventional shorthand for hydrated hydrogen ions, represented by hydronium in this model. Substitution into the dimensionless acid dissociation constant givesSolving this quadratic equation and rejecting its negative root of a polynomial gives an exact result within the stated model:The second form avoids subtracting nearly equal numbers. Unlike the approximation $\alpha \approx \sqrt{K_a/c}$, it retains depletion of neutral weak acid and always satisfies $0<\alpha <1$ for positive $K_a,c$. The broader weak acid mass and charge balances restore self-ionization of water when that omitted contribution matters.

For an original worked example, stipulate $K_a=10^{-5}$ without identifying a real substance. At $C_T=10^{-2}\mathrm{mol}{\mathrm{L}}^{-1}$, the weak acid dissociation fraction is approximately $0.0311267$, or $3.11267\%$, and $[{\mathrm{H}}_3{\mathrm{O}}^{+}]=3.11267\times 10^{-4}\mathrm{mol}{\mathrm{L}}^{-1}$. A hundredfold dilution to $C_T=10^{-4}\mathrm{mol}{\mathrm{L}}^{-1}$ raises the fraction to $0.270156$, or $27.0156\%$, but lowers $[{\mathrm{H}}_3{\mathrm{O}}^{+}]$ to $2.70156\times 10^{-5}\mathrm{mol}{\mathrm{L}}^{-1}$. A completely ionized strong acid at $C_T=10^{-4}\mathrm{mol}{\mathrm{L}}^{-1}$ would have $[{\mathrm{H}}_3{\mathrm{O}}^{+}]\approx 10^{-4}\mathrm{mol}{\mathrm{L}}^{-1}$: less than the more concentrated weak acid in the first calculation, despite its greater converted fraction.

The directions of both changes follow without relying on the plot. Put $x=[{\mathrm{H}}_3{\mathrm{O}}^{+}]/c^{\circ }=c\alpha$. Rearranging the chemical equilibrium relation givesThus smaller $c$ forces smaller $x$, which in turn makes $\alpha$ larger. The derivative proves that total hydronium concentration and converted fraction move in opposite directions during dilution. In this model, adding solvent also makes additional acid units ionize at fixed total acid amount of substance, even though their ions are spread over more volume. That distinction explains why “more ionized” alone does not predict greater electrical conductivity.

Do not extend the no-background model to unlimited dilution: its prediction $[{\mathrm{H}}_3{\mathrm{O}}^{+}]\to 0$ omits water's own ions. The weak acid mass and charge balances include that background. Added salts, other acids or bases, and nonideal activity coefficients also change the relation between analytical concentration, converted fraction and hydronium concentration.

In signal transduction, inositol trisphosphate usually means inositol 1,4,5-trisphosphate: a soluble intracellular second messenger. An extracellular ligand, its cell-surface receptor, IP3 and the released calcium ions are distinct components. IP3 binds an IP3 receptor on the endoplasmic reticulum, promoting stored ${\mathrm{Ca}}^{2+}$ release into the cytosol.^[ref]

The useful separation is spatial: an extracellular message can control an internal store without entering it. The existing intracellular-injection experiment under metabotropic receptor tests bypassing reception; the Pancreatic IP3 store fractionation experiment below tests which internal compartment supplies the released calcium. Neither question is answered merely by observing a downstream membrane electric current.

Insulin is a protein hormone. Its mature form has two polypeptide chains; identifying their sequences and protein disulfide bonds provided the motivating example in Sanger's insulin sequencing experiment. See Cooper: insulin as a two-chain hormone, figure 2.16.

A meal illustrates the insulin side of blood glucose homeostasis: rising glucose stimulates beta cells in the pancreatic islets, and released insulin favors uptake and storage of fuel. Alpha cells produce glucagon, while delta cells produce somatostatin, which inhibits release of both insulin and glucagon. The pancreas therefore contains interacting sensor and secretory biological cells, rather than one undifferentiated source of hormones. ^[ref]

Insulin and glucagon are peptide hormones, built from amino acid residues joined by peptide bonds; glucose is a small carbohydrate molecule. A hormone changes signal transduction, not the identity of the fuel it regulates. Human mature insulin has 51 amino acid residues in two polypeptide chains. Beta cells process proinsulin to insulin and C-peptide, storing the products in secretory granules for exocytosis. Increased glucose metabolism raises the ATP-to-ADP ratio, tending to close ATP-sensitive potassium channels; depolarization and entry of calcium ions then trigger exocytosis. This is an important triggering pathway, with additional amplification and modulatory inputs.^[ref]

Binding to the insulin receptor, a receptor tyrosine kinase, starts phosphorylation of the receptor and insulin receptor substrates. Recruitment of phosphoinositide 3-kinase and activation of Akt transmit a major metabolic branch. In skeletal muscle and adipose tissue, that branch helps move GLUT4 to the cell membrane, increasing glucose uptake by facilitated diffusion. GLUT4 is a membrane transport protein, not an insulin receptor. Insulin also favors glycogenesis in skeletal muscle and the liver, and inhibits lipolysis in adipose tissue. In the liver, suppression of glucose output involves enzyme regulation, gene expression, and indirect changes in substrate supply. Its relative direct and indirect contributions are more complex than a single Akt arrow. ^[ref]

Insulin is not a universal permission slip for glucose entry: red blood cells and much of the nervous system use uptake mechanisms that are not acutely dependent on insulin. Nor does the liver use the same GLUT4 switch as skeletal muscle. This is why reduced insulin action can change blood glucose dramatically without stopping all glucose uptake. ^[ref]

Diabetes can disrupt production, response, and counterregulation. Type 1 diabetes usually involves destruction of beta cells and severe loss of endogenous insulin; type 2 diabetes combines insulin resistance with insufficient beta cell compensation. High circulating insulin can therefore coexist with impaired insulin action. Inappropriate glucagon release can add to excessive liver glucose output, and the response to low blood glucose can also be impaired: "more glucagon" is not a complete description of diabetes. These distinctions explain mechanisms, rather than prescribe treatment. ^{[ref] [ref]}

In 1939, Alan Hodgkin and Andrew Huxley reported intracellular action potential recordings from squid giant axons at Plymouth.^[ref]

Alan Hodgkin's later account describes advancing a capillary electrode from a cut end into intact axon, avoiding scraping the cell membrane. Its Figure 3 uses a seawater-filled capillary internally, with external seawater as zero: the readout is internal relative to external electric potential. This supports a voltage across the surface cell membrane. As a separate ionic control, the account reports that raising external potassium toward its internal concentration reversibly abolished resting voltage; this was later work, not a control asserted for the 1939 recording. Injury and electrode-solution junction potentials limit interpretation. Voltage recording alone does not identify every conducting ion. A voltage clamp additionally uses feedback to impose voltage and measures the required electric current.^[ref]

In the schematic, connect the intracellular electrode to the positive input and the external reference electrode to the negative input of a voltage recorder. After electrode-offset correction, a negative reading means ${\varphi }_{\mathrm{inside}}<{\varphi }_{\mathrm{outside}}$. A useful baseline check is to compare both electrodes in the same external chemical solution before insertion; this is a measurement check, not an additional historical observation claimed here. Swapping inputs reverses the readout sign without changing the biological cell's membrane potential.

Intramolecular capture of an alkene-derived iodonium ion by an alcohol produces a cyclic ether and a carbon–iodine bond. Backside opening gives an anti relationship between the new C–O and C–I bonds.

An ion is a chemical atom or a group of chemical atoms with a nonzero net electric charge. A positive ion is a cation; a negative ion is an anion. The whole entity carries the electric charge: a hydronium ion is a group of four chemical atoms with net charge $+e$. This definition agrees with ^[ref].

For an ordinary ion containing only atomic nuclei and electrons, let $N_p$ count all its protons and $N_e$ all its electrons. Each proton contributes the elementary charge $+e$, each electron contributes $-e$, and neutrons contribute zero. ThereforeThe signed integer $z$ is the net electric charge number. Removing an electron increases $z$ by one; adding an electron decreases $z$ by one. Changing the electron count leaves the atomic number, and therefore the identity of the chemical element, unchanged.

For example, a neutral sodium chemical atom has $11$ protons and $11$ electrons. Its cation ${\mathrm{Na}}^{+}$ still has $11$ protons, but only $10$ electrons, so $q=(11-10)e=+e$. A neutral chlorine chemical atom has $17$ protons and $17$ electrons; its anion ${\mathrm{Cl}}^{-}$ has $17$ protons and $18$ electrons, so $q=(17-18)e=-e$. These are particle inventories, not pictures of atomic orbitals. See 2.6 Ionic and Molecular Compounds (§2.6: ions and ionic compounds).

One sodium chloride formula unit accounts for one ${\mathrm{Na}}^{+}$ cation and one ${\mathrm{Cl}}^{-}$ anion, whose net electric charges sum to zero. Ordinary solid sodium chloride is an extended arrangement of ions, rather than discrete $\mathrm{NaCl}$ molecules. This is a useful distinction: a neutral material can contain charged constituents, and its chemical formula tells us their ratio without claiming that each pair is a separate molecule.

Ion bookkeeping connects chemistry to electric current: moving ions can transport electric charge, while stationary ions cannot supply a transport current density. In electrochemistry, both signs of ions can contribute to the same conventional current. An ion opposing a fixed electric charge is called a counterion.

An ion channel is a membrane protein that provides a selective pathway for ions across a cell membrane. An open pore permits passive transport down the relevant electrochemical gradient; it does not supply the free energy for uphill transport as a pump involved in active transport does. Two things are needed for a net electric current: an available pathway and an electrochemical potential difference. Opening a pore alone need not produce a net electric current. See Ion Channels and the Electrical Properties of Membranes.

The selective permeability of an ion channel depends on interactions between its pore and the passing ions, not simply on a hole's diameter. Some ion channels strongly favor potassium over sodium; others admit several kinds of positively charged ions. Thus selective does not necessarily mean exclusive to one ion species. See Purves et al., Neuroscience, 2nd edition (2001): molecular structure of ion channels and the mixed-channel example in Purves et al.: principles derived from studies of the neuromuscular junction.

Gating is the opening and closing of an ion channel's pathway. A voltage-gated ion channel responds to membrane potential; an ionotropic receptor can respond to a bound ligand. Gating changes the available electrical conductance, while the electrochemical gradient supplies the drive for passive transport. For a fixed reversal potential in the simple model below, opening more identical ion channels increases the magnitude of the electric current at a fixed nonzero drive, without choosing its sign independently of membrane potential. The two-state ion-channel gating model describes how the open fraction can change. See the Alberts reference above.

For a worked approximation, hold an open population's electrical conductance at $g=10\mathrm{nS}$ and its reversal potential at $E_{\mathrm{rev}}=-80\mathrm{mV}$. Use $V=V_{\mathrm{inside}}-V_{\mathrm{outside}}$ for membrane potential and inward-positive conventional current:At $V=-100,-80,-60\mathrm{mV}$, respectively, the electric currents are $+200,0,-200\mathrm{pA}$, since $1\mathrm{nS}\times 1\mathrm{mV}=1\mathrm{pA}$. Positive electric current means net positive electric charge entering, or net negative electric charge leaving; it does not mean that every ion moves inward. For a pore passing only positive ions, the three results mean net inward passage, no net passage, and net outward passage. These stipulated values describe an illustrative Ohmic approximation, not measured properties of a particular ion channel; see reversal potential for the current plot and limitations.

The useful connection is between a molecular gate and a controllable electric current. A ligand can change electrical conductance through an ionotropic receptor, or membrane potential can change it through a voltage-gated ion channel, connecting recognition and electrical signaling. In a historical landmark, Erwin Neher and Bert Sakmann reported currents from individual ion channels in frog muscle membranes in 1976. See Neher and Sakmann, Single-channel currents recorded from membrane of denervated frog muscle fibres, Nature 260, 799–802 (1976).

An ion-dipole attraction couples an ion's electric field to a molecule's electric dipole moment. In the elementary point-electric dipole approximation, the interaction potential energy is $U=-\mathbf{p}\cdot \mathbf{E}$. An orientation with the electric dipole moment along the electric field lowers this energy. For water, the oxygen end preferentially faces a cation, and the hydrogen end an anion. At nonzero temperature, fluctuations and competing hydrogen bonds prevent perfect alignment of every molecule.^[ref]

Reversible exchange of ions between a solution and an ion-bearing solid. Selectivity, competing dissolved ions and the solid exchange capacity control contaminant removal.

A polymeric ion exchanger with fixed charged sites and mobile counterions. Exhausted resin is a secondary waste; ion exchange is not an unrestricted removal method for neutral dissolved molecules.

Ionic bonding binds oppositely charged ions through attraction governed by electrostatics. In ordinary solid sodium chloride, each cation interacts with many anions, and also with other cations: attraction and repulsion together contribute to the binding of an extended ionic crystal. The chemical formula $\mathrm{NaCl}$ specifies equal numbers of the two kinds of ions; it does not divide the solid into isolated two-atom molecules.^[ref]

This distinction explains a striking combination of properties: ordinary dry sodium chloride conducts electric current poorly, while its molten form or a sufficiently concentrated chemical solution in water conducts well. The ions already exist in the solid; their ability to move through the sample changes. A conductivity experiment on salt solutions tests this transport picture, rather than simply asserting that charged constituents must make every material conductive.

Electrical conductivity arising from motion of ions. In a dilute, uncorrelated vacancy model, a mobile oxygen vacancy has effective charge $+2e$ and moves opposite to the oxygen ions that fill it.

An ionic crystal repeats an arrangement of ions in three dimensions. A unit cell describes that repetition, whereas a formula unit describes composition. The two accounting devices answer different questions. Coulomb's law is not restricted to an arbitrarily drawn line connecting one cation to one anion: every ion contributes to the electric field experienced by the others.

The activation free-energy barrier for an ion to hop between sites. ionic conductivity also depends on the concentration of mobile defects and correlations between successive hops.